Timeline


and .

06/01/10:

11:04 Changeset [d478b36fde5c30a512a21260cafab00c6395b175] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
added colors to DIG uml
06:11 Changeset [42dc276fcfa73e81f1fe5165d753032a02b0405a] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Merge branch 'master' of git.syncleus.com:dANN
05:54 Changeset [1f66102889e28cb6aaaec7961e9fe4bf1a837bea] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added initial versions of the UML for the Data Interrelational Graph

05/31/10:

22:01 Ticket #173 (MapMatrix and MatrixGraph) created by seh
MapMatrix<X> implementing Matrix (and/or OrderedMatrix) interface …
21:46 Changeset [35bc028c8d3ca7856953ebb74b07674cdc5839c1] by SeH <seh999@…>
The unit test mentioned in the previous commit.
21:27 Changeset [4f078f392210bba517c7670a7bce9ad62d5f8eba] by SeH <seh999@…>
Fixes for higher order (>1) chains. Higher-order chains currently fail to …
20:49 Changeset [787fb742129a3d849d388d7af6bc4f35a65731be] by SeH <seh999@…>
Bug fixes for SimpleMarkovChain and SimpleMarkovChainEvidence. Unit tests …

05/28/10:

11:22 Changeset [ac7559d16983550b375d7c1c628950b27627ab16] by SeH <seh999@…>
Adding Realtime neural network classes.
03:56 Changeset [3212ce7fd9b60c522ff0aa80f2809aeff413d74c] by SeH <seh999@…>
Removing Realtime neural network code until it is cleanroom
00:03 Ticket #172 (Review Inheritance of Realtime Neuron Classes) created by seh
tty1: SeH_: we should definately try to expand from Neuron at a minimum... …

05/27/10:

23:48 Changeset [40bb4edbe07411e98184de46facc769dbd15031c] by SeH <seh999@…>
Merge branch 'master' of git.syncleus.com:dANN
23:47 Changeset [98cca6a7b86a8765f0c601e77e436e7eb1b2d2a1] by SeH <seh999@…>
minor update to MemoryRDFGraph
23:37 Changeset [4634deb802d610899957328863faa94b5c7a3e81] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
added nbproject to .gitignore
13:26 Changeset [2ed19999acbd141014d232c108145f8fbfad06b0] by SeH <seh999@…>
Added beginnings of the realtime neural networks package.

05/21/10:

18:44 Changeset [ddb39c75dcdce949827be8d9cc348b4f65b92934] by SeH <seh999@…>
Adds the RDF-dANN project. Basic implementation of reading an RDF graph …

05/20/10:

13:45 Changeset [fc007c862e35f0233d1439a753a99fb31be863d4] by SeH <seh999@…>
Added proper ANT build.xml scripts

05/17/10:

13:44 Changeset [19fe57caa4ab1eee59e5413bf7f996e31132f297] by SeH <seh999@…>
Hypergraph rendering support. Accessible from DemoJungGraphVis.
13:05 Changeset [d85b8a809f7c685da67fcac2e8bfee0dbd97be23] by SeH <seh999@…>
removing unnecessary files, ex: .svn folders from Hypergraph visualization …
13:02 Changeset [b99312491d430f2e45ff02dec86f4c1761db9170] by SeH <seh999@…>
Changes supposed to be commited in previous commit, for Undirected graph …
13:01 Changeset [e513dcd3433d61da033065b0222dc1966d40c633] by SeH <seh999@…>
GraphPanel now visualizes Undirected graphs, distinguishing them from …
12:25 Changeset [19ba6abdd5a1e7a2e07cfc5e7caa21b56d96af38] by SeH <seh999@…>
Removed old files that I forgot to remove in last commit.
12:22 Changeset [77d28454c926060f33577cf1323a10a11f4e9464] by SeH <seh999@…>
Refactored demos and classes. Run DemoJungGraphVis.java for all of the …

05/16/10:

23:27 Ticket #171 (MutableGraph.clear()) created by seh
implement clear() - removing all nodes and edges. Either in the …

05/14/10:

10:46 Changeset [0d41262a05ea93e7d387023fdc7fee45c1845de0] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Demonstrates problem in markov chain
07:39 Changeset [8456232bab52fb6ff29893364bf4c99a184184ce] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
consolodatedsome duplicate code in the constructors for SimpleMarkovChain.

05/13/10:

21:44 Changeset [7c5d75993105d49cd27f11c1b5205555987824c4] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed some errors with the initial jung_dann commit(improper refactoring)
21:08 Changeset [f12fafd82e6da3d97174a7b7ab06633b99f1082a] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added unit test for MarkovChainEvidence and finished implementing it. It …
13:28 Changeset [0f9fdda9d0f944944628650ed2ef43150ac43785] by SeH <seh999@…>
Initial commit of Neuroph/dANN integration. (Not fully functional yet.)
12:33 Changeset [b9f6931032710bc171ab5e6b04c2f5fcce7a397c] by SeH <seh999@…>
Addition of jung_dann project. Includes adapters to and from JUNG2 graph …

05/09/10:

21:35 Changeset [531348163908df99dc36ee12ff223d591f0bf205] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed typo in last commit.
21:29 Changeset [9c146f0064b7439d6a7eed05725f5b3182cf54cf] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed some accidentally removed white space that should have been …
20:51 Changeset [112867bc7c4c67487ae942077353aac7fee21c5a] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed some more bad practices. Fixed some infinite recursion errors. Fixed …
19:20 Changeset [26a38fbe1175af6690311bc06c50df3aaf6fafff] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added TODO to activation functions.
19:16 Changeset [671c3d54986e2f41f79a90c7ffd17debcc2aabca] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Removed UML diagrams as they can just be generated from the code, consider …
18:48 Changeset [b91f0b2d6797dcb784e39a8579044ea6656cf322] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added some uml static class diagrams of the cassify pacage assubpackages.
18:28 Changeset [067d9eaef72fae4a590bda3c464700583729e61b] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed a few more bad practices. Added Local to the contructor of the …
15:47 Changeset [d75f424c1acf7090eaedd8dc01eec6ff34a9d18a] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed several minor bad programming practices.
14:54 Changeset [1e38b008593ac87da2ebe496072135915d9f25de] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Changed getEdges call in AbstractAdjacenyGraph changed to this.edges. All …
12:29 Changeset [d562f61dab01640725b054acc4c2fc9f8b03d674] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed many checkstyle errors throughout package
11:03 Changeset [f73152d36b5fa622eb38c13cb0dc745151b87b48] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed several coding bad practices across the entire project, should …
10:02 Changeset [1f68d19c6d8dbee0a596926d188429a15694dafd] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed some code style issues. final has been implemented everywhere in the …
07:35 Changeset [44423e0b1ca6cdce77a9a00e6bb8e8156404b12c] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Modified .gitignore to include intelliJ files as well as a better format …

05/08/10:

12:10 Changeset [8466d0f2a01fc282535efe375a6bd428ca71c778] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added Utility function to get the Greatest Common Deenominator …
06:56 Changeset [736fbdd08db2dc9d5fd3431e11c72c4d633896c7] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Expanded Counters utility class to include lexicograph and Johnson-Trotter …
06:42 Changeset [b623f45e75f2a329e8e99afb18a0ed6b16e5ae38] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added JohnsonTrotterPermutationCounter for producing permutations of any …

05/07/10:

19:55 Changeset [59820e8ebfc1cf7ee543cb897ebd79be7c036974] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Refactored Lexicographic permutations counter to rewrite the algorithm …
19:33 Changeset [34615acbbb596a32f0e09170985e6b6c89a75522] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added Lexicographic permutation counter to the counting package (and unit …
18:19 Changeset [794bc1f59444812a4b1b2dfb08c0eb4ae0f4dafd] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Refactored test classes for counting package slightly. Changed …
14:42 Changeset [bed07246fbb95937ea22d6925a686fcd8eddebfe] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Refactored math.set package to be called math.counting and added a Counter …

05/06/10:

18:45 Changeset [13b482f15a1f74ee2d2d22b95936ca7cb3b7c314] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Major refactoring. Moved the individual implementations of graphs mostly …

05/05/10:

20:30 Changeset [4bcea86cbc9e303b5f0f01a6fc8b2ab15705a1b2] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
removed SimpleGraph inner class fromt he Johnson Graph Transformer. It now …
20:19 Changeset [c1056df64bc303e4ee413e4ea9df9c0485bf06a2] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
refactored class package to change some of the names of the classes as …

05/04/10:

16:12 Ticket #170 (Define writable vs immutable graph implementations.) created by freemo
Right now all Simple* graphs are immutable. Change these to Immutable* …
14:10 Ticket #169 (Complete javadoc throughout library) created by freemo
Javadocs are incomplete in the library, complete them!
13:47 Ticket #162 (HyperassociativeMap refactoring) closed by freemo
fixed: Well all of this has been fixed or otherwise addressed over the past few …
13:41 Changeset [d3ecfd89d6d07e5aabf0558f1e65ec5fe7fe95bf] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added useWeights for individual node equilibrium distances for …
12:10 Changeset [3cff158bb2be997ee0dcc8c78bf3d1744bb10422] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added getter/setter for equilibrium distance on Hyperassociative Map and …
11:45 Changeset [693db556f8395fddfa13c53325a795e871d6431e] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added reset method to GraphDrawer interface as well as Hyperassociative …
10:56 Ticket #168 (Modify learning adjustment in Hyperassociative Map) closed by freemo
fixed: Fixed in 19cc594061ea5a4fa39a28015244ed829479c9dd.
10:52 Changeset [d2e4aa1b464332c352f1d9dbd6b136c5dcc5cd17] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added constructors to the child implementations o Hyperassociative map to …
09:14 Changeset [19cc594061ea5a4fa39a28015244ed829479c9dd] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added isAligned and isAlignable implementation to Hyperassociative map. …

05/03/10:

16:06 Changeset [f3a19148ae51aaee4bd3bb5a5c25c01d156cd1aa] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Refactored LEARNING_RATE to learningRate in HyperassociativeMap.
16:03 Ticket #168 (Modify learning adjustment in Hyperassociative Map) created by freemo
Currently Hyperassociative Map slowly reduces the learning rate regardless …
15:50 Changeset [f2a8fd87057299d2370e3c9790572e95d4f10cec] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Modified Hyperassociative map to adjust its learning rate over time.
14:04 Ticket #167 (Adapt Neuroph Neural Networks to dANN Graph's / Brain's) created by seh
 http://neuroph.sourceforge.net/
09:22 Changeset [fc4fa2c2456be29b16e28eb7c2b63a5c1a3921f1] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed the way the ExecutorService is handled in the ColorMap demo.
09:14 Changeset [0e5c2957a93df568111deabb8a9c7e0d0cfca6ff] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Fixed the way ExecutorService is handled in the hyperassociative map demo.
04:58 Changeset [964e67290d14725d5cbfdf836cf03308028616e8] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Modified TestLayeredLoopMap to use a safer try-finally block for …
02:02 Ticket #166 (HyperassoiativeMap ocassionally shows after images or flickers.) created by freemo
Occasionally (and seems perhaps it is related) the hyperassociative map …

05/02/10:

18:17 Ticket #165 (Make NCI Demo multi-threaded again.) created by freemo
With the recent changes to the mutli-threading schema the NCI demo is no …
18:12 Ticket #161 (HyperassociativeMap.stop() method added to stop hanging threads) closed by freemo
fixed: Fixed in 80360aadc60f6f22bcd42cb7932f57c5edc3c218. The …
18:09 Changeset [80360aadc60f6f22bcd42cb7932f57c5edc3c218] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Cleaned up the way multi-threading is done. All threaded classes ca now be …
10:28 Changeset [0863aa42fd033202d3f697656a0999a215ae1643] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added *ValueGene unit tests
09:50 Ticket #164 (Ensure interfaces are used rather than implementations) created by freemo
Currently in some packaged, like genetics, the implementation or abstract …
09:49 Ticket #163 (Check mutate methods are consistent and in interfaces) created by freemo
currently mutate isnt very consistent and often doesnt occur in the parent …
09:14 Changeset [55e844baa5728840caa5847d190fe216e92d1039] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added TestActivationValues test
09:13 Changeset [180b7f71d92b483a0df83fb0ba63d0b8631b6dc5] by Jeffrey Phillips Freeman <jeffrey.freeman@…>
Added TestActivationValues test
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